Application Meta
jModeltest 2.1
(c) 2011-onwards D. Darriba, G.L. Taboada, R. Doallo and D. Posada,(1) Department of Biochemistry, Genetics and Immunology
University of Vigo, 36310 Vigo, Spain.
(2) Department of Electronics and Systems
University of A Coruna, 15071 A Coruna, Spain.
e-mail: ddarriba@udc.es, dposada@uvigo.es
Sun Jan 05 14:30:55 PST 2020
Linux 3.10.0-957.12.2.el7.x86_64, arch: amd64, bits: 64, numcores: 24
| Citation: | Darriba D, Taboada GL, Doallo R and Posada D. 2012. "jModelTest 2: more models, new heuristics and parallel computing". Nature Methods 9, 772. |
Settings
Arguments = -tr 24 --set-property log-dir=./ -d infile.phy -s 11 -f -i -g 4 -t ML -AIC -S BEST -p -a -wInput Alignment: "infile.phy"
NumTaxa = 385
Length = 1,163
Phyml version = 20130103
Phyml binary = PhyML_3.0_linux64
Candidate models = 88
number of substitution schemes = 11
including models with equal/unequal base frequencies (+F)
including models with/without a proportion of invariable sites (+I)
including models with/without rate variation among sites (+G) (nCat = 4)
Optimized free parameters (K) = Substitution parameters + 767 branch lengths + topology
Base tree for likelihood calculations = Maximum Likelihood
Tree topology search operation = Best of {NNI, SPR}
Model Optimization Results
| ID | Name | Partition | -lnL | p | fA | fC | fG | fT | ti/tv | R(a) | R(b) | R(c) | R(d) | R(e) | R(f) | p-inv | shape |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | JC | 000000 | 52852.8843 | 768 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 2 | JC+I | 000000 | 51862.6273 | 769 | - | - | - | - | - | - | - | - | - | - | - | 0.1230 | - |
| 3 | JC+G | 000000 | 45705.8394 | 769 | - | - | - | - | - | - | - | - | - | - | - | - | 0.4620 |
| 4 | JC+I+G | 000000 | 45691.8261 | 770 | - | - | - | - | - | - | - | - | - | - | - | 0.0650 | 0.5000 |
| 5 | F81 | 000000 | 52761.0783 | 771 | 0.2476 | 0.2573 | 0.2033 | 0.2918 | - | - | - | - | - | - | - | - | - |
| 6 | F81+I | 000000 | 51775.7904 | 772 | 0.2446 | 0.2621 | 0.2023 | 0.2910 | - | - | - | - | - | - | - | 0.1230 | - |
| 7 | F81+G | 000000 | 45504.1834 | 772 | 0.2218 | 0.2771 | 0.1864 | 0.3148 | - | - | - | - | - | - | - | - | 0.4820 |
| 8 | F81+I+G | 000000 | 45489.2561 | 773 | 0.2213 | 0.2784 | 0.1869 | 0.3135 | - | - | - | - | - | - | - | 0.0730 | 0.5240 |
| 9 | K80 | 010010 | 49133.6641 | 769 | - | - | - | - | 3.5830 | - | - | - | - | - | - | - | - |
| 10 | K80+I | 010010 | 48101.7671 | 770 | - | - | - | - | 3.7083 | - | - | - | - | - | - | 0.1230 | - |
| 11 | K80+G | 010010 | 41737.8638 | 770 | - | - | - | - | 4.4011 | - | - | - | - | - | - | - | 0.4780 |
| 12 | K80+I+G | 010010 | 41714.6349 | 771 | - | - | - | - | 4.3798 | - | - | - | - | - | - | 0.0780 | 0.5350 |
| 13 | HKY | 010010 | 48989.1877 | 772 | 0.2348 | 0.2651 | 0.1950 | 0.3051 | 3.7606 | - | - | - | - | - | - | - | - |
| 14 | HKY+I | 010010 | 47989.0770 | 773 | 0.2396 | 0.2669 | 0.1985 | 0.2950 | 3.8221 | - | - | - | - | - | - | 0.1220 | - |
| 15 | HKY+G | 010010 | 41706.4029 | 773 | 0.2517 | 0.2420 | 0.2247 | 0.2817 | 4.3131 | - | - | - | - | - | - | - | 0.4810 |
| 16 | HKY+I+G | 010010 | 41683.4484 | 774 | 0.2519 | 0.2399 | 0.2236 | 0.2846 | 4.2924 | - | - | - | - | - | - | 0.0780 | 0.5380 |
| 17 | TrNef | 010020 | 48922.8854 | 770 | - | - | - | - | - | 1.0000 | 5.5044 | 1.0000 | 1.0000 | 9.1532 | 1.0000 | - | - |
| 18 | TrNef+I | 010020 | 47945.0996 | 771 | - | - | - | - | - | 1.0000 | 5.8801 | 1.0000 | 1.0000 | 9.0818 | 1.0000 | 0.1230 | - |
| 19 | TrNef+G | 010020 | 41734.6313 | 771 | - | - | - | - | - | 1.0000 | 8.7264 | 1.0000 | 1.0000 | 8.7566 | 1.0000 | - | 0.4620 |
| 20 | TrNef+I+G | 010020 | 41715.5746 | 772 | - | - | - | - | - | 1.0000 | 8.9897 | 1.0000 | 1.0000 | 8.6412 | 1.0000 | 0.0790 | 0.5370 |
| 21 | TrN | 010020 | 48878.2343 | 773 | 0.2910 | 0.2174 | 0.2416 | 0.2499 | - | 1.0000 | 5.1443 | 1.0000 | 1.0000 | 9.7754 | 1.0000 | - | - |
| 22 | TrN+I | 010020 | 47913.2671 | 774 | 0.2836 | 0.2281 | 0.2377 | 0.2506 | - | 1.0000 | 5.6314 | 1.0000 | 1.0000 | 9.4571 | 1.0000 | 0.1220 | - |
| 23 | TrN+G | 010020 | 41686.6718 | 774 | 0.2319 | 0.2610 | 0.2053 | 0.3018 | - | 1.0000 | 10.3427 | 1.0000 | 1.0000 | 7.2115 | 1.0000 | - | 0.4750 |
| 24 | TrN+I+G | 010020 | 41666.5936 | 775 | 0.2303 | 0.2604 | 0.2062 | 0.3031 | - | 1.0000 | 10.3097 | 1.0000 | 1.0000 | 7.1897 | 1.0000 | 0.0770 | 0.5280 |
| 25 | TPM1 | 012210 | 49125.1053 | 770 | - | - | - | - | - | 1.0000 | 7.7802 | 1.1689 | 1.1689 | 7.7802 | 1.0000 | - | - |
| 26 | TPM1+I | 012210 | 48093.4016 | 771 | - | - | - | - | - | 1.0000 | 8.0470 | 1.1663 | 1.1663 | 8.0470 | 1.0000 | 0.1230 | - |
| 27 | TPM1+G | 012210 | 41731.2272 | 771 | - | - | - | - | - | 1.0000 | 9.5909 | 1.1907 | 1.1907 | 9.5909 | 1.0000 | - | 0.4700 |
| 28 | TPM1+I+G | 012210 | 41711.6170 | 772 | - | - | - | - | - | 1.0000 | 9.6502 | 1.1963 | 1.1963 | 9.6502 | 1.0000 | 0.0800 | 0.5400 |
| 29 | TPM1uf | 012210 | 48985.2915 | 773 | 0.2339 | 0.2649 | 0.1959 | 0.3053 | - | 1.0000 | 7.9118 | 1.1664 | 1.1664 | 7.9118 | 1.0000 | - | - |
| 30 | TPM1uf+I | 012210 | 47985.2895 | 774 | 0.2396 | 0.2668 | 0.1987 | 0.2950 | - | 1.0000 | 8.1042 | 1.1750 | 1.1750 | 8.1042 | 1.0000 | 0.1220 | - |
| 31 | TPM1uf+G | 012210 | 41701.1426 | 774 | 0.2514 | 0.2417 | 0.2247 | 0.2822 | - | 1.0000 | 9.4185 | 1.1933 | 1.1933 | 9.4185 | 1.0000 | - | 0.4740 |
| 32 | TPM1uf+I+G | 012210 | 41679.3486 | 775 | 0.2518 | 0.2396 | 0.2237 | 0.2850 | - | 1.0000 | 9.3640 | 1.1794 | 1.1794 | 9.3640 | 1.0000 | 0.0790 | 0.5410 |
| 33 | TPM2 | 010212 | 49117.7441 | 770 | - | - | - | - | - | 1.1053 | 7.6267 | 1.1053 | 1.0000 | 7.6267 | 1.0000 | - | - |
| 34 | TPM2+I | 010212 | 48098.5023 | 771 | - | - | - | - | - | 1.1144 | 7.8638 | 1.1144 | 1.0000 | 7.8638 | 1.0000 | 0.1230 | - |
| 35 | TPM2+G | 010212 | 41727.6816 | 771 | - | - | - | - | - | 1.2395 | 9.7779 | 1.2395 | 1.0000 | 9.7779 | 1.0000 | - | 0.4630 |
| 36 | TPM2+I+G | 010212 | 41707.4666 | 772 | - | - | - | - | - | 1.2519 | 9.8599 | 1.2519 | 1.0000 | 9.8599 | 1.0000 | 0.0800 | 0.5390 |
| 37 | TPM2uf | 010212 | 48990.0762 | 773 | 0.2336 | 0.2649 | 0.1963 | 0.3053 | - | 1.0210 | 7.3905 | 1.0210 | 1.0000 | 7.3905 | 1.0000 | - | - |
| 38 | TPM2uf+I | 010212 | 47992.1385 | 774 | 0.2401 | 0.2667 | 0.1983 | 0.2949 | - | 1.0023 | 7.4524 | 1.0023 | 1.0000 | 7.4524 | 1.0000 | 0.1220 | - |
| 39 | TPM2uf+G | 010212 | 41700.9502 | 774 | 0.2469 | 0.2428 | 0.2292 | 0.2811 | - | 1.1621 | 9.2916 | 1.1621 | 1.0000 | 9.2916 | 1.0000 | - | 0.4700 |
| 40 | TPM2uf+I+G | 010212 | 41680.4672 | 775 | 0.2478 | 0.2398 | 0.2275 | 0.2849 | - | 1.1450 | 9.2296 | 1.1450 | 1.0000 | 9.2296 | 1.0000 | 0.0790 | 0.5420 |
| 41 | TPM3 | 012012 | 49128.6711 | 770 | - | - | - | - | - | 0.9768 | 7.1458 | 1.0000 | 0.9768 | 7.1458 | 1.0000 | - | - |
| 42 | TPM3+I | 012012 | 48095.8438 | 771 | - | - | - | - | - | 0.9351 | 7.1908 | 1.0000 | 0.9351 | 7.1908 | 1.0000 | 0.1230 | - |
| 43 | TPM3+G | 012012 | 41735.2342 | 771 | - | - | - | - | - | 1.0018 | 8.7557 | 1.0000 | 1.0018 | 8.7557 | 1.0000 | - | 0.4660 |
| 44 | TPM3+I+G | 012012 | 41714.4153 | 772 | - | - | - | - | - | 1.0034 | 8.8011 | 1.0000 | 1.0034 | 8.8011 | 1.0000 | 0.0790 | 0.5380 |
| 45 | TPM3uf | 012012 | 48996.0227 | 773 | 0.2334 | 0.2626 | 0.1958 | 0.3082 | - | 1.0995 | 7.6113 | 1.0000 | 1.0995 | 7.6113 | 1.0000 | - | - |
| 46 | TPM3uf+I | 012012 | 47992.4150 | 774 | 0.2394 | 0.2667 | 0.1986 | 0.2952 | - | 1.0138 | 7.4872 | 1.0000 | 1.0138 | 7.4872 | 1.0000 | 0.1220 | - |
| 47 | TPM3uf+G | 012012 | 41701.1812 | 774 | 0.2518 | 0.2386 | 0.2241 | 0.2855 | - | 1.1527 | 9.2108 | 1.0000 | 1.1527 | 9.2108 | 1.0000 | - | 0.4780 |
| 48 | TPM3uf+I+G | 012012 | 41679.0345 | 775 | 0.2518 | 0.2365 | 0.2232 | 0.2885 | - | 1.1777 | 9.3082 | 1.0000 | 1.1777 | 9.3082 | 1.0000 | 0.0790 | 0.5410 |
| 49 | TIM1ef | 012230 | 48914.7212 | 771 | - | - | - | - | - | 1.0000 | 5.9331 | 1.1669 | 1.1669 | 9.8864 | 1.0000 | - | - |
| 50 | TIM1ef+I | 012230 | 47941.2209 | 772 | - | - | - | - | - | 1.0000 | 6.4085 | 1.1700 | 1.1700 | 9.8886 | 1.0000 | 0.1220 | - |
| 51 | TIM1ef+G | 012230 | 41732.6592 | 772 | - | - | - | - | - | 1.0000 | 9.5176 | 1.1872 | 1.1872 | 9.5790 | 1.0000 | - | 0.4630 |
| 52 | TIM1ef+I+G | 012230 | 41710.6458 | 773 | - | - | - | - | - | 1.0000 | 9.8409 | 1.1957 | 1.1957 | 9.4594 | 1.0000 | 0.0790 | 0.5360 |
| 53 | TIM1 | 012230 | 48880.8687 | 774 | 0.2894 | 0.2184 | 0.2416 | 0.2506 | - | 1.0000 | 5.5994 | 1.1726 | 1.1726 | 10.5769 | 1.0000 | - | - |
| 54 | TIM1+I | 012230 | 47909.5274 | 775 | 0.2837 | 0.2289 | 0.2350 | 0.2524 | - | 1.0000 | 6.1605 | 1.1767 | 1.1767 | 10.2580 | 1.0000 | 0.1230 | - |
| 55 | TIM1+G | 012230 | 41682.4969 | 775 | 0.2312 | 0.2608 | 0.2055 | 0.3025 | - | 1.0000 | 11.2962 | 1.1849 | 1.1849 | 7.8676 | 1.0000 | - | 0.4760 |
| 56 | TIM1+I+G | 012230 | 41662.0942 | 776 | 0.2297 | 0.2603 | 0.2060 | 0.3040 | - | 1.0000 | 11.2540 | 1.1845 | 1.1845 | 7.8241 | 1.0000 | 0.0770 | 0.5290 |
| 57 | TIM2ef | 010232 | 48917.2086 | 771 | - | - | - | - | - | 1.0917 | 5.7208 | 1.0917 | 1.0000 | 9.5307 | 1.0000 | - | - |
| 58 | TIM2ef+I | 010232 | 47941.7950 | 772 | - | - | - | - | - | 1.0988 | 6.1955 | 1.0988 | 1.0000 | 9.5731 | 1.0000 | 0.1220 | - |
| 59 | TIM2ef+G | 010232 | 41726.9806 | 772 | - | - | - | - | - | 1.2387 | 9.7519 | 1.2387 | 1.0000 | 9.7783 | 1.0000 | - | 0.4670 |
| 60 | TIM2ef+I+G | 010232 | 41706.2617 | 773 | - | - | - | - | - | 1.2499 | 10.0752 | 1.2499 | 1.0000 | 9.6710 | 1.0000 | 0.0790 | 0.5360 |
| 61 | TIM2 | 010232 | 48874.7539 | 774 | 0.2917 | 0.2182 | 0.2396 | 0.2505 | - | 0.9749 | 5.0972 | 0.9749 | 1.0000 | 9.6364 | 1.0000 | - | - |
| 62 | TIM2+I | 010232 | 47913.2593 | 775 | 0.2844 | 0.2292 | 0.2343 | 0.2521 | - | 0.9784 | 5.6082 | 0.9784 | 1.0000 | 9.3331 | 1.0000 | 0.1220 | - |
| 63 | TIM2+G | 010232 | 41685.0890 | 775 | 0.2264 | 0.2615 | 0.2094 | 0.3027 | - | 1.1689 | 11.2818 | 1.1689 | 1.0000 | 7.7795 | 1.0000 | - | 0.4770 |
| 64 | TIM2+I+G | 010232 | 41662.5816 | 776 | 0.2242 | 0.2607 | 0.2111 | 0.3040 | - | 1.1932 | 11.3423 | 1.1932 | 1.0000 | 7.8608 | 1.0000 | 0.0780 | 0.5300 |
| 65 | TIM3ef | 012032 | 48917.3953 | 771 | - | - | - | - | - | 0.9908 | 5.4755 | 1.0000 | 0.9908 | 9.1280 | 1.0000 | - | - |
| 66 | TIM3ef+I | 012032 | 47943.0806 | 772 | - | - | - | - | - | 0.9454 | 5.7422 | 1.0000 | 0.9454 | 8.8728 | 1.0000 | 0.1220 | - |
| 67 | TIM3ef+G | 012032 | 41736.1433 | 772 | - | - | - | - | - | 1.0005 | 8.7023 | 1.0000 | 1.0005 | 8.7675 | 1.0000 | - | 0.4630 |
| 68 | TIM3ef+I+G | 012032 | 41713.8402 | 773 | - | - | - | - | - | 1.0029 | 8.9837 | 1.0000 | 1.0029 | 8.6530 | 1.0000 | 0.0790 | 0.5360 |
| 69 | TIM3 | 012032 | 48879.7947 | 774 | 0.2897 | 0.2172 | 0.2407 | 0.2524 | - | 1.0774 | 5.3412 | 1.0000 | 1.0774 | 10.0706 | 1.0000 | - | - |
| 70 | TIM3+I | 012032 | 47914.4301 | 775 | 0.2834 | 0.2292 | 0.2349 | 0.2526 | - | 1.0018 | 5.6844 | 1.0000 | 1.0018 | 9.4416 | 1.0000 | 0.1220 | - |
| 71 | TIM3+G | 012032 | 41685.5862 | 775 | 0.2320 | 0.2572 | 0.2059 | 0.3050 | - | 1.1351 | 10.9410 | 1.0000 | 1.1351 | 7.7034 | 1.0000 | - | 0.4770 |
| 72 | TIM3+I+G | 012032 | 41663.8513 | 776 | 0.2299 | 0.2567 | 0.2067 | 0.3067 | - | 1.1408 | 10.9214 | 1.0000 | 1.1408 | 7.6953 | 1.0000 | 0.0770 | 0.5300 |
| 73 | TVMef | 012314 | 49121.2149 | 772 | - | - | - | - | - | 1.0870 | 8.1518 | 1.2910 | 1.1436 | 8.1518 | 1.0000 | - | - |
| 74 | TVMef+I | 012314 | 48083.5967 | 773 | - | - | - | - | - | 1.0506 | 8.2480 | 1.2837 | 1.0983 | 8.2480 | 1.0000 | 0.1230 | - |
| 75 | TVMef+G | 012314 | 41727.7615 | 773 | - | - | - | - | - | 1.2774 | 10.9222 | 1.4741 | 1.2175 | 10.9222 | 1.0000 | - | 0.4780 |
| 76 | TVMef+I+G | 012314 | 41703.3557 | 774 | - | - | - | - | - | 1.2918 | 10.9978 | 1.4956 | 1.2368 | 10.9978 | 1.0000 | 0.0800 | 0.5410 |
| 77 | TVM | 012314 | 48985.9545 | 775 | 0.2343 | 0.2626 | 0.1956 | 0.3075 | - | 1.1035 | 8.2484 | 1.1727 | 1.2764 | 8.2484 | 1.0000 | - | - |
| 78 | TVM+I | 012314 | 47992.5788 | 776 | 0.2380 | 0.2662 | 0.2012 | 0.2945 | - | 1.0238 | 8.1620 | 1.1891 | 1.1778 | 8.1620 | 1.0000 | 0.1220 | - |
| 79 | TVM+G | 012314 | 41696.8385 | 776 | 0.2462 | 0.2390 | 0.2279 | 0.2869 | - | 1.3711 | 11.0743 | 1.3854 | 1.4100 | 11.0743 | 1.0000 | - | 0.4880 |
| 80 | TVM+I+G | 012314 | 41672.9705 | 777 | 0.2483 | 0.2365 | 0.2268 | 0.2883 | - | 1.3691 | 11.0693 | 1.3680 | 1.4316 | 11.0693 | 1.0000 | 0.0790 | 0.5410 |
| 81 | SYM | 012345 | 48918.9095 | 773 | - | - | - | - | - | 1.0877 | 6.2025 | 1.2695 | 1.1632 | 10.3333 | 1.0000 | - | - |
| 82 | SYM+I | 012345 | 47938.5226 | 774 | - | - | - | - | - | 1.0351 | 6.4907 | 1.2795 | 1.0979 | 9.9949 | 1.0000 | 0.1220 | - |
| 83 | SYM+G | 012345 | 41723.7330 | 774 | - | - | - | - | - | 1.2642 | 10.6420 | 1.4709 | 1.2116 | 10.8716 | 1.0000 | - | 0.4600 |
| 84 | SYM+I+G | 012345 | 41704.6620 | 775 | - | - | - | - | - | 1.2822 | 11.1734 | 1.4905 | 1.2232 | 10.7591 | 1.0000 | 0.0790 | 0.5370 |
| 85 | GTR | 012345 | 48878.4029 | 776 | 0.2909 | 0.2155 | 0.2423 | 0.2514 | - | 1.0677 | 5.6755 | 1.1398 | 1.2730 | 10.8490 | 1.0000 | - | - |
| 86 | GTR+I | 012345 | 47915.0170 | 777 | 0.2824 | 0.2283 | 0.2390 | 0.2503 | - | 0.9918 | 6.0902 | 1.1746 | 1.1622 | 10.2327 | 1.0000 | 0.1220 | - |
| 87 | GTR+G | 012345 | 41679.2079 | 777 | 0.2263 | 0.2589 | 0.2092 | 0.3056 | - | 1.3357 | 13.2431 | 1.4029 | 1.3674 | 9.1499 | 1.0000 | - | 0.4810 |
| 88 | GTR+I+G | 012345 | 41657.9915 | 778 | 0.2250 | 0.2567 | 0.2105 | 0.3078 | - | 1.3835 | 13.2935 | 1.4136 | 1.3824 | 9.2848 | 1.0000 | 0.0790 | 0.5330 |
There are 88 different topologies. The following table shows the models supporting each topology and the rank according to each Information Criterion, as well as Robinson-Foulds and Euclidean distances with the tree of the best-fit model.
| ID | Models | Topology | AIC | BIC | AICc | DT | |
|---|---|---|---|---|---|---|---|
| 0 |
GTR+I+G
|
RANK | 0 | - | - | - | |
| Weight | 0.8184 | - | - | - | |||
| RF | 0 | - | - | - | |||
| AVG Distance | 0.0000e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 1 |
HKY+I+G
|
RANK | 1 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 38 | - | - | - | |||
| AVG Distance | 2.8217e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 2 |
TIM1+I+G
|
RANK | 2 | - | - | - | |
| Weight | 0.0999 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 2.8143e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 3 |
TrN+I+G
|
RANK | 3 | - | - | - | |
| Weight | 0.0030 | - | - | - | |||
| RF | 48 | - | - | - | |||
| AVG Distance | 2.8225e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 4 |
TPM2uf+I+G
|
RANK | 4 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 52 | - | - | - | |||
| AVG Distance | 2.8148e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 5 |
TIM3+I+G
|
RANK | 5 | - | - | - | |
| Weight | 0.0172 | - | - | - | |||
| RF | 52 | - | - | - | |||
| AVG Distance | 2.8139e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 6 |
TPM1uf+I+G
|
RANK | 6 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 54 | - | - | - | |||
| AVG Distance | 2.8116e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 7 |
TPM3uf+I+G
|
RANK | 7 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 54 | - | - | - | |||
| AVG Distance | 2.8140e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 8 |
TIM2+I+G
|
RANK | 8 | - | - | - | |
| Weight | 0.0614 | - | - | - | |||
| RF | 54 | - | - | - | |||
| AVG Distance | 2.8213e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 9 |
TVM+I+G
|
RANK | 9 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 66 | - | - | - | |||
| AVG Distance | 2.8150e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 10 |
TPM2+I+G
|
RANK | 10 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 80 | - | - | - | |||
| AVG Distance | 2.8251e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 11 |
TPM3+I+G
|
RANK | 11 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 2.7830e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 12 |
TIM3ef+I+G
|
RANK | 12 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 90 | - | - | - | |||
| AVG Distance | 2.8238e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 13 |
SYM+I+G
|
RANK | 13 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 92 | - | - | - | |||
| AVG Distance | 2.8309e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 14 |
TVMef+I+G
|
RANK | 14 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 94 | - | - | - | |||
| AVG Distance | 2.8246e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 15 |
K80+I+G
|
RANK | 15 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 96 | - | - | - | |||
| AVG Distance | 2.8273e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 16 |
TPM1+I+G
|
RANK | 16 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 96 | - | - | - | |||
| AVG Distance | 2.8247e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 17 |
TIM1ef+I+G
|
RANK | 17 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 100 | - | - | - | |||
| AVG Distance | 2.8227e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 18 |
TIM2ef+I+G
|
RANK | 18 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 104 | - | - | - | |||
| AVG Distance | 2.8303e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 19 |
TIM1+G
|
RANK | 19 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 106 | - | - | - | |||
| AVG Distance | 2.8435e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 20 |
TrNef+I+G
|
RANK | 20 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 110 | - | - | - | |||
| AVG Distance | 2.8263e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 21 |
TrN+G
|
RANK | 21 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 112 | - | - | - | |||
| AVG Distance | 2.8538e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 22 |
TIM3+G
|
RANK | 22 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 116 | - | - | - | |||
| AVG Distance | 2.8457e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 23 |
TIM2+G
|
RANK | 23 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 122 | - | - | - | |||
| AVG Distance | 2.8506e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 24 |
GTR+G
|
RANK | 24 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 122 | - | - | - | |||
| AVG Distance | 2.8252e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 25 |
HKY+G
|
RANK | 25 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 124 | - | - | - | |||
| AVG Distance | 2.8496e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 26 |
TVMef+G
|
RANK | 26 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 124 | - | - | - | |||
| AVG Distance | 2.8648e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 27 |
JC+I+G
|
RANK | 27 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 126 | - | - | - | |||
| AVG Distance | 2.7863e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 28 |
TPM1uf+G
|
RANK | 28 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 126 | - | - | - | |||
| AVG Distance | 2.8551e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 29 |
TVM+G
|
RANK | 29 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 126 | - | - | - | |||
| AVG Distance | 2.8185e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 30 |
TPM2+I
|
RANK | 30 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 130 | - | - | - | |||
| AVG Distance | 2.0078e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 31 |
TPM3+G
|
RANK | 31 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 132 | - | - | - | |||
| AVG Distance | 2.9083e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 32 |
TIM3+I
|
RANK | 32 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 132 | - | - | - | |||
| AVG Distance | 2.0130e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 33 |
SYM+G
|
RANK | 33 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 132 | - | - | - | |||
| AVG Distance | 2.9154e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 34 |
F81+I+G
|
RANK | 34 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 134 | - | - | - | |||
| AVG Distance | 2.6882e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 35 |
TPM1+G
|
RANK | 35 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 134 | - | - | - | |||
| AVG Distance | 2.8894e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 36 |
TIM1ef+I
|
RANK | 36 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 134 | - | - | - | |||
| AVG Distance | 2.0160e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 37 |
TPM1+I
|
RANK | 37 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 136 | - | - | - | |||
| AVG Distance | 2.0108e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 38 |
TPM3uf+G
|
RANK | 38 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 136 | - | - | - | |||
| AVG Distance | 2.8470e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 39 |
TIM1ef+G
|
RANK | 39 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 136 | - | - | - | |||
| AVG Distance | 2.9146e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 40 |
TIM1+I
|
RANK | 40 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 136 | - | - | - | |||
| AVG Distance | 2.0123e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 41 |
SYM+I
|
RANK | 41 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 136 | - | - | - | |||
| AVG Distance | 2.0080e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 42 |
TVM+I
|
RANK | 42 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 138 | - | - | - | |||
| AVG Distance | 2.0133e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 43 |
TrNef+I
|
RANK | 43 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.0168e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 44 |
TPM2+G
|
RANK | 44 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.9149e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 45 |
TPM2uf+G
|
RANK | 45 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.8783e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 46 |
TPM3+I
|
RANK | 46 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.0108e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 47 |
TIM2ef+I
|
RANK | 47 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.0160e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 48 |
TIM2+I
|
RANK | 48 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 140 | - | - | - | |||
| AVG Distance | 2.0130e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 49 |
TrNef+G
|
RANK | 49 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.9152e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 50 |
TPM1uf+I
|
RANK | 50 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.0082e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 51 |
TPM2uf+I
|
RANK | 51 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.0097e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 52 |
TIM3ef+I
|
RANK | 52 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.0130e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 53 |
TIM3ef+G
|
RANK | 53 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.9141e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 54 |
TVMef+I
|
RANK | 54 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 1.9412e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 55 |
TVM
|
RANK | 55 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 142 | - | - | - | |||
| AVG Distance | 2.0009e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 56 |
TPM3uf+I
|
RANK | 56 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 144 | - | - | - | |||
| AVG Distance | 2.0081e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 57 |
HKY+I
|
RANK | 57 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 146 | - | - | - | |||
| AVG Distance | 2.0156e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 58 |
TIM2ef+G
|
RANK | 58 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 146 | - | - | - | |||
| AVG Distance | 2.8978e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 59 |
K80+G
|
RANK | 59 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 148 | - | - | - | |||
| AVG Distance | 2.8606e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 60 |
TrN+I
|
RANK | 60 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 148 | - | - | - | |||
| AVG Distance | 2.0130e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 61 |
K80+I
|
RANK | 61 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 150 | - | - | - | |||
| AVG Distance | 2.0098e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 62 |
HKY
|
RANK | 62 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 150 | - | - | - | |||
| AVG Distance | 2.0073e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 63 |
JC+I
|
RANK | 63 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 152 | - | - | - | |||
| AVG Distance | 1.9972e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 64 |
TPM2
|
RANK | 64 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 156 | - | - | - | |||
| AVG Distance | 2.0021e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 65 |
SYM
|
RANK | 65 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 156 | - | - | - | |||
| AVG Distance | 2.0126e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 66 |
GTR
|
RANK | 66 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 156 | - | - | - | |||
| AVG Distance | 2.0025e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 67 |
TVMef
|
RANK | 67 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 158 | - | - | - | |||
| AVG Distance | 2.0098e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 68 |
TrNef
|
RANK | 68 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 160 | - | - | - | |||
| AVG Distance | 2.0014e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 69 |
TPM3
|
RANK | 69 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 160 | - | - | - | |||
| AVG Distance | 2.0107e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 70 |
TIM1ef
|
RANK | 70 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 160 | - | - | - | |||
| AVG Distance | 2.0125e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 71 |
TIM2ef
|
RANK | 71 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 162 | - | - | - | |||
| AVG Distance | 2.0127e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 72 |
GTR+I
|
RANK | 72 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 162 | - | - | - | |||
| AVG Distance | 2.0141e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 73 |
TIM1
|
RANK | 73 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 164 | - | - | - | |||
| AVG Distance | 2.0077e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 74 |
TPM1uf
|
RANK | 74 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 166 | - | - | - | |||
| AVG Distance | 2.0107e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 75 |
TIM2
|
RANK | 75 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 166 | - | - | - | |||
| AVG Distance | 2.0052e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 76 |
TIM3ef
|
RANK | 76 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 166 | - | - | - | |||
| AVG Distance | 2.0070e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 77 |
TrN
|
RANK | 77 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 168 | - | - | - | |||
| AVG Distance | 2.0106e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 78 |
F81+I
|
RANK | 78 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 170 | - | - | - | |||
| AVG Distance | 2.0019e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 79 |
K80
|
RANK | 79 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 170 | - | - | - | |||
| AVG Distance | 2.0119e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 80 |
TPM1
|
RANK | 80 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 170 | - | - | - | |||
| AVG Distance | 2.0070e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 81 |
TIM3
|
RANK | 81 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 170 | - | - | - | |||
| AVG Distance | 2.0083e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 82 |
JC+G
|
RANK | 82 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 172 | - | - | - | |||
| AVG Distance | 2.8268e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 83 |
TPM2uf
|
RANK | 83 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 172 | - | - | - | |||
| AVG Distance | 2.0108e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 84 |
F81+G
|
RANK | 84 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 176 | - | - | - | |||
| AVG Distance | 2.7613e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 85 |
TPM3uf
|
RANK | 85 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 176 | - | - | - | |||
| AVG Distance | 2.0066e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 86 |
F81
|
RANK | 86 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 180 | - | - | - | |||
| AVG Distance | 2.0022e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 87 |
JC
|
RANK | 87 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 190 | - | - | - | |||
| AVG Distance | 1.9977e+01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - |
AIC Selection Results
Model selected
| Model | GTR+I+G | ||
|---|---|---|---|
| partition | 012345 | ||
| -lnL | 41657.9915 | ||
| K | 778 | ||
| freqA | 0.2250 | R(a) | 1.3835 |
| freqC | 0.2567 | R(b) | 13.2935 |
| freqG | 0.2105 | R(c) | 1.4136 |
| freqT | 0.3078 | R(d) | 1.3824 |
| ti/tv | - | R(e) | 9.2848 |
| R(f) | 1.0000 | ||
| p-inv | 0.0790 | gamma | 0.5330 |
Best model tree
| Model | -lnL | K | AIC | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| GTR+I+G | 41657.9915 | 778 | 84871.9829 | 0.0000 | 0.8184 | 0.8184 |
| TIM1+I+G | 41662.0942 | 776 | 84876.1883 | 4.2054 | 0.0999 | 0.9183 |
| TIM2+I+G | 41662.5816 | 776 | 84877.1633 | 5.1804 | 0.0614 | 0.9797 |
| TIM3+I+G | 41663.8513 | 776 | 84879.7025 | 7.7196 | 0.0172 | 0.9970 |
| TrN+I+G | 41666.5936 | 775 | 84883.1873 | 11.2043 | 0.0030 | 1.0000 |
| TVM+I+G | 41672.9705 | 777 | 84899.9411 | 27.9581 | 0.0000 | 1.0000 |
| TPM3uf+I+G | 41679.0345 | 775 | 84908.0689 | 36.0860 | 0.0000 | 1.0000 |
| TPM1uf+I+G | 41679.3486 | 775 | 84908.6971 | 36.7142 | 0.0000 | 1.0000 |
| TPM2uf+I+G | 41680.4672 | 775 | 84910.9345 | 38.9516 | 0.0000 | 1.0000 |
| GTR+G | 41679.2079 | 777 | 84912.4159 | 40.4330 | 0.0000 | 1.0000 |
| HKY+I+G | 41683.4484 | 774 | 84914.8968 | 42.9139 | 0.0000 | 1.0000 |
| TIM1+G | 41682.4969 | 775 | 84914.9938 | 43.0108 | 0.0000 | 1.0000 |
| TIM2+G | 41685.0890 | 775 | 84920.1779 | 48.1950 | 0.0000 | 1.0000 |
| TIM3+G | 41685.5862 | 775 | 84921.1724 | 49.1895 | 0.0000 | 1.0000 |
| TrN+G | 41686.6718 | 774 | 84921.3436 | 49.3607 | 0.0000 | 1.0000 |
| TVM+G | 41696.8385 | 776 | 84945.6771 | 73.6942 | 0.0000 | 1.0000 |
| TPM2uf+G | 41700.9502 | 774 | 84949.9003 | 77.9174 | 0.0000 | 1.0000 |
| TPM1uf+G | 41701.1426 | 774 | 84950.2852 | 78.3023 | 0.0000 | 1.0000 |
| TPM3uf+G | 41701.1812 | 774 | 84950.3624 | 78.3795 | 0.0000 | 1.0000 |
| TVMef+I+G | 41703.3557 | 774 | 84954.7113 | 82.7284 | 0.0000 | 1.0000 |
| TIM2ef+I+G | 41706.2617 | 773 | 84958.5234 | 86.5405 | 0.0000 | 1.0000 |
| HKY+G | 41706.4029 | 773 | 84958.8058 | 86.8228 | 0.0000 | 1.0000 |
| TPM2+I+G | 41707.4666 | 772 | 84958.9332 | 86.9503 | 0.0000 | 1.0000 |
| SYM+I+G | 41704.6620 | 775 | 84959.3239 | 87.3410 | 0.0000 | 1.0000 |
| TPM1+I+G | 41711.6170 | 772 | 84967.2340 | 95.2511 | 0.0000 | 1.0000 |
| TIM1ef+I+G | 41710.6458 | 773 | 84967.2916 | 95.3087 | 0.0000 | 1.0000 |
| K80+I+G | 41714.6349 | 771 | 84971.2698 | 99.2869 | 0.0000 | 1.0000 |
| TPM3+I+G | 41714.4153 | 772 | 84972.8306 | 100.8476 | 0.0000 | 1.0000 |
| TIM3ef+I+G | 41713.8402 | 773 | 84973.6804 | 101.6975 | 0.0000 | 1.0000 |
| TrNef+I+G | 41715.5746 | 772 | 84975.1491 | 103.1662 | 0.0000 | 1.0000 |
| SYM+G | 41723.7330 | 774 | 84995.4659 | 123.4830 | 0.0000 | 1.0000 |
| TPM2+G | 41727.6816 | 771 | 84997.3632 | 125.3803 | 0.0000 | 1.0000 |
| TIM2ef+G | 41726.9806 | 772 | 84997.9611 | 125.9782 | 0.0000 | 1.0000 |
| TVMef+G | 41727.7615 | 773 | 85001.5229 | 129.5400 | 0.0000 | 1.0000 |
| TPM1+G | 41731.2272 | 771 | 85004.4543 | 132.4714 | 0.0000 | 1.0000 |
| TIM1ef+G | 41732.6592 | 772 | 85009.3184 | 137.3355 | 0.0000 | 1.0000 |
| TrNef+G | 41734.6313 | 771 | 85011.2626 | 139.2797 | 0.0000 | 1.0000 |
| TPM3+G | 41735.2342 | 771 | 85012.4683 | 140.4854 | 0.0000 | 1.0000 |
| K80+G | 41737.8638 | 770 | 85015.7276 | 143.7447 | 0.0000 | 1.0000 |
| TIM3ef+G | 41736.1433 | 772 | 85016.2867 | 144.3037 | 0.0000 | 1.0000 |
| F81+I+G | 45489.2561 | 773 | 92524.5121 | 7652.5292 | 0.0000 | 1.0000 |
| F81+G | 45504.1834 | 772 | 92552.3668 | 7680.3839 | 0.0000 | 1.0000 |
| JC+I+G | 45691.8261 | 770 | 92923.6523 | 8051.6693 | 0.0000 | 1.0000 |
| JC+G | 45705.8394 | 769 | 92949.6788 | 8077.6959 | 0.0000 | 1.0000 |
| TIM1+I | 47909.5274 | 775 | 97369.0548 | 12497.0718 | 0.0000 | 1.0000 |
| TrN+I | 47913.2671 | 774 | 97374.5343 | 12502.5513 | 0.0000 | 1.0000 |
| TIM2+I | 47913.2593 | 775 | 97376.5186 | 12504.5357 | 0.0000 | 1.0000 |
| TIM3+I | 47914.4301 | 775 | 97378.8602 | 12506.8773 | 0.0000 | 1.0000 |
| GTR+I | 47915.0170 | 777 | 97384.0339 | 12512.0510 | 0.0000 | 1.0000 |
| SYM+I | 47938.5226 | 774 | 97425.0452 | 12553.0623 | 0.0000 | 1.0000 |
| TIM1ef+I | 47941.2209 | 772 | 97426.4417 | 12554.4588 | 0.0000 | 1.0000 |
| TIM2ef+I | 47941.7950 | 772 | 97427.5900 | 12555.6071 | 0.0000 | 1.0000 |
| TIM3ef+I | 47943.0806 | 772 | 97430.1612 | 12558.1782 | 0.0000 | 1.0000 |
| TrNef+I | 47945.0996 | 771 | 97432.1992 | 12560.2163 | 0.0000 | 1.0000 |
| TPM1uf+I | 47985.2895 | 774 | 97518.5789 | 12646.5960 | 0.0000 | 1.0000 |
| HKY+I | 47989.0770 | 773 | 97524.1540 | 12652.1711 | 0.0000 | 1.0000 |
| TPM2uf+I | 47992.1385 | 774 | 97532.2769 | 12660.2940 | 0.0000 | 1.0000 |
| TPM3uf+I | 47992.4150 | 774 | 97532.8299 | 12660.8470 | 0.0000 | 1.0000 |
| TVM+I | 47992.5788 | 776 | 97537.1575 | 12665.1746 | 0.0000 | 1.0000 |
| TVMef+I | 48083.5967 | 773 | 97713.1934 | 12841.2105 | 0.0000 | 1.0000 |
| TPM1+I | 48093.4016 | 771 | 97728.8031 | 12856.8202 | 0.0000 | 1.0000 |
| TPM3+I | 48095.8438 | 771 | 97733.6875 | 12861.7046 | 0.0000 | 1.0000 |
| TPM2+I | 48098.5023 | 771 | 97739.0047 | 12867.0217 | 0.0000 | 1.0000 |
| K80+I | 48101.7671 | 770 | 97743.5341 | 12871.5512 | 0.0000 | 1.0000 |
| TIM2 | 48874.7539 | 774 | 99297.5079 | 14425.5250 | 0.0000 | 1.0000 |
| TrN | 48878.2343 | 773 | 99302.4687 | 14430.4857 | 0.0000 | 1.0000 |
| TIM3 | 48879.7947 | 774 | 99307.5893 | 14435.6064 | 0.0000 | 1.0000 |
| GTR | 48878.4029 | 776 | 99308.8057 | 14436.8228 | 0.0000 | 1.0000 |
| TIM1 | 48880.8687 | 774 | 99309.7374 | 14437.7545 | 0.0000 | 1.0000 |
| TIM1ef | 48914.7212 | 771 | 99371.4424 | 14499.4595 | 0.0000 | 1.0000 |
| TIM2ef | 48917.2086 | 771 | 99376.4171 | 14504.4342 | 0.0000 | 1.0000 |
| TIM3ef | 48917.3953 | 771 | 99376.7905 | 14504.8076 | 0.0000 | 1.0000 |
| SYM | 48918.9095 | 773 | 99383.8191 | 14511.8362 | 0.0000 | 1.0000 |
| TrNef | 48922.8854 | 770 | 99385.7708 | 14513.7879 | 0.0000 | 1.0000 |
| TPM1uf | 48985.2915 | 773 | 99516.5830 | 14644.6001 | 0.0000 | 1.0000 |
| TVM | 48985.9545 | 775 | 99521.9091 | 14649.9262 | 0.0000 | 1.0000 |
| HKY | 48989.1877 | 772 | 99522.3754 | 14650.3924 | 0.0000 | 1.0000 |
| TPM2uf | 48990.0762 | 773 | 99526.1523 | 14654.1694 | 0.0000 | 1.0000 |
| TPM3uf | 48996.0227 | 773 | 99538.0455 | 14666.0625 | 0.0000 | 1.0000 |
| TPM2 | 49117.7441 | 770 | 99775.4881 | 14903.5052 | 0.0000 | 1.0000 |
| TVMef | 49121.2149 | 772 | 99786.4298 | 14914.4469 | 0.0000 | 1.0000 |
| TPM1 | 49125.1053 | 770 | 99790.2106 | 14918.2277 | 0.0000 | 1.0000 |
| TPM3 | 49128.6711 | 770 | 99797.3422 | 14925.3593 | 0.0000 | 1.0000 |
| K80 | 49133.6641 | 769 | 99805.3282 | 14933.3453 | 0.0000 | 1.0000 |
| F81+I | 51775.7904 | 772 | 105095.5807 | 20223.5978 | 0.0000 | 1.0000 |
| JC+I | 51862.6273 | 769 | 105263.2546 | 20391.2717 | 0.0000 | 1.0000 |
| F81 | 52761.0783 | 771 | 107064.1565 | 22192.1736 | 0.0000 | 1.0000 |
| JC | 52852.8843 | 768 | 107241.7686 | 22369.7857 | 0.0000 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| AIC: | Akaike Information Criterion |
| delta: | AIC difference |
| weight: | AIC weight |
| cumWeight: | cumulative AIC weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
GTR+I+G TIM1+I+G TIM2+I+G TIM3+I+G TrN+I+G TVM+I+G TPM3uf+I+G TPM1uf+I+G TPM2uf+I+G GTR+G HKY+I+G TIM1+G TIM2+G TIM3+G TrN+G TVM+G TPM2uf+G TPM1uf+G TPM3uf+G TVMef+I+G TIM2ef+I+G HKY+G TPM2+I+G SYM+I+G TPM1+I+G TIM1ef+I+G K80+I+G TPM3+I+G TIM3ef+I+G TrNef+I+G SYM+G TPM2+G TIM2ef+G TVMef+G TPM1+G TIM1ef+G TrNef+G TPM3+G K80+G TIM3ef+G F81+I+G F81+G JC+I+G JC+G TIM1+I TrN+I TIM2+I TIM3+I GTR+I SYM+I TIM1ef+I TIM2ef+I TIM3ef+I TrNef+I TPM1uf+I HKY+I TPM2uf+I TPM3uf+I TVM+I TVMef+I TPM1+I TPM3+I TPM2+I K80+I TIM2 TrN TIM3 GTR TIM1 TIM1ef TIM2ef TIM3ef SYM TrNef TPM1uf TVM HKY TPM2uf TPM3uf TPM2 TVMef TPM1 TPM3 K80 F81+I JC+I F81 JC
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (GTR+I+G) selected by AIC
with jModeltest 2.1.10 v20160303 on Sun Jan 05 14:30:55 PST 2020]
BEGIN PAUP;
Lset base=(0.2250 0.2567 0.2105 ) nst=6 rmat=(1.3835 13.2935 1.4136 1.3824 9.2848) rates=gamma shape=0.5330 ncat=4 pinvar=0.0790;
END;
--
Model Averaged Phylogeny
| Selection criterion | AIC |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |

